Artemis Supercomputer on the Hunt for Deeper Understanding of Genomics

artemis-supercomputer-on-the-hunt-for-deeper-understanding-of-genomics

Ever puzzled what you’re if truth be told made of?

Your genome is a irregular genetic code that determines your characteristics. It’s a particular combination of DNA molecules that makes you you.

Finding out the total genetic code of a person or a neighborhood of folk can succor us compose a bigger conception of illnesses, enable precision remedy and energy pharmacogenomics — how genes affect a person’s response to medication.

As piece of a national mission launched by Abu Dhabi’s Division of Effectively being, Personnel 42 is harnessing its Artemis supercomputer to decode the human genome and toughen affected person care. Powered by NVIDIA GPUs, Artemis is the 26th quickest draw in the enviornment.

G42, based totally mostly in Abu Dhabi, develops and deploys holistic and scalable AI and cloud computing offerings. Via its Inception Institute of Man made Intelligence, it carries out traditional study on AI, gigantic recordsdata and machine finding out.

Building a world-class AI supercomputer customarily takes six months or longer. In precisely three weeks, G42 designed, built and deployed Artemis with NVIDIA, utilizing the DGX SuperPOD reference structure and Mellanox AI networking cloth.

The Inhabitants Genome Program

Built with 81 NVIDIA DGX systems, Artemis can bring a full of 7.2 petaflops of double-precision HPL performance and speed workloads 120x sooner than G42’s old draw.

Now the supercomputer is being put to work on the Inhabitants Genome Program. This national effort goals to enhance scientific conception of Abu Dhabi electorate’ genomes and toughen healthcare in the nation.

Till now, the conception of genetic variation in the Arab population has been a enviornment attributable to the shortcoming of a excessive-quality Emirati reference genome. The Inhabitants Genome Program will enrich accessible recordsdata by producing a reference genome particular to electorate of the United Arab Emirates.

The program goals to be the first of its form in the enviornment to then employ this as a baseline and incorporate the genomic recordsdata into healthcare administration processes.

“Embracing innovation and offering a complete healthcare programme in the Emirate of Abu Dhabi remains at the forefront of our priorities. Two of the enviornment’s most fun technologies — DNA sequencing and AI — will attain collectively in this mission,” explained H.E. Sheikh Abdulla Bin Mohamed Al Hamed, Chairman of Division of Effectively being-Abu Dhabi, in a press assertion.

Accelerating Processing of Genomic Records

In the first piece of the program, the genomes of 10,000 folk are repute to be examined. To make certain the supreme throughput and intellectual analysis, both short-be taught and lengthy-be taught genome sequencing platforms will doubtless be aged, leveraging G42’s collaboration with BGI and Oxford Nanopore — two world genome sequencing leaders.

Anonymized DNA samples will first be unexcited and processed utilizing Oxford Nanopore PromethION sequencers. These gadgets, which have embedded NVIDIA GPU technology to enable AI at the edge, will succor to velocity up the processing of genomic recordsdata.

The processed recordsdata will doubtless be provided, in a graphical structure, to Artemis for AI-powered analysis, with toughen from NVIDIA Parabricks utility to toughen their population analysis.

The closing outcomes will doubtless be offered to the study and clinical neighborhood to succor bring simpler affected person care. This is in a position to maybe maybe maybe also encompass more valid remedies for cases equivalent to cancer, schizophrenia, autism, and cardiovascular and neuronal illnesses.

“With NVIDIA’s GPU technology we’re in a repute to give a extremely optimized AI platform for the national Inhabitants Genome Program and velocity up recordsdata processing,” talked about Min S. Park, director of Genome Functions at G42. “This collaboration helps our desires of constructing a program for customized care across the UAE, bringing experts, recordsdata and technology collectively for bettering affected person care.”

Combatting COVID-19

G42 is additionally utilizing its supercomputing prowess in the battle in opposition to COVID-19, having nowadays established a brand fresh detection laboratory in Masdar City, Abu Dhabi. This facility can, on a each day foundation, toughen tens of hundreds of real-time reverse transcription polymerase chain response (RT-PCR) assessments. These assessments detect the presence of the SARS-CoV-2 virus in samples taken from patients.

Besides, G42 is serious referring to the manufacturing of COVID-19 diagnostic kits, the provide of thermal sensors and, working in coordination with local and world wisely being authorities, assisting in the creation of efficient prevention and detection protocols to have the virus.

“Skills will play a a need to-maintain role in curbing the unfold of the coronavirus and the valid computing functionality of Artemis can succor in many techniques — from like a flash vaccine building, the build laptop simulations would possibly well maybe maybe also change handbook experiments and crop the attain time of a vaccine, to mapping and predicting trends in the outbreak, as wisely as predicting virus mutations,” talked about Peng Xiao, CEO of G42.

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